Here you can analyze RNA-Seq data using the IDEP Shiny app. iDEP (integrated Differential Expression and Pathway analysis) is a web-based tool for analyzing RNA-seq data, available at http://ge-lab.org/idep/. It reads in gene-level expression data (read counts or FPKM), performs exploratory data analysis (EDA), differential expression, pathway analysis, biclustering, and co-expression network analysis.