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BioProject Accession
Description
Nb runs
Nb replicates
Experimental design
Abbreviations
Publication
PRJNA278661
Response to phosphate fluctuations
10
2
Time (4d / 8d) * (Pi-depleted / CT) + Pi resupply 4d
Pi, inorganic phosphate; CT, control; d, days
PRJNA279965
Response to nitrogen starvation in a nitrate reductase knock-down line
12
3
(WT/KD-NR21) * (N-replete (880 µM nitrate) / N starved (0 µM nitrate))
KD, Knock Down; WT, Wild-Type; NR, Nitrate Reductase; N, nitrogen
PRJEB11970
Comparison of cells grown in-replete conditions collected at 4, 8, 20, and 36h with nitrate starved cells collected at 4, 8, and 20h, dark treatment for 8h, nocodazole treatment for 20h, and phosphate starvation for 36h
30
3
Treatment (CT (4h/8h/20h/36h), darkness (8h), no nitrate (4h/8h/20h), no phosphate (36h), nocodazole (20h))
Nocadozole Treatment; CT, control untreated; H, Hours; Ndeplete, Nitrogen-depleted; Pdeplete, phosphate‐starved cells
PRJNA311568
Response to shift in nitrogen sources and availability in Wild Type and Nitrate reductase KO lines
74
2
40 = 2 strains (WT/NR-KO14) x Time (T0/T1/T3/T18/T18(II)/T36/T60/T84/T132/d10) 4 = 2 strains (WT/NR-KO14) x Treatment (NH4/N-free) 30 = treatment (NH4/N-free/NO3/NO2) x Time (NA/T-15/T-45/T-end)
KO, Knock Out; WT, Wild-Type; NR, Nitrate Reductase; N free, Nitrogen free media; NH4, Ammonium; d, day following Nitrate addition in cells first grown on NH4+, transfered in N-free media (2h) and then resupended in N03 for several days
PRJNA319251
Effect of competition with Alteromonas macleodii
18
3
Time (Exponential / Stationary) * competition (monoculture / co-culture + Alteromonas WT / co-culture + Alteromonas ΔnasA mutant)
diatom monoculture and diatom-bacteria co-cultures; Exp, exponential; Stat, stationnary
PRJNA322663
Comparison of different CO2 and light conditions
36
3
CO2 (50/400/5000 ppm) * (0µE / 125µE) *(oligoDT / not)
High = 5000ppm ; Normal = 400ppm ; Low = 50 ppm
PRJNA349063
Response to additions of Glufosinate-ammonium (GSA), L-Methionine sulfoximine (MSX), and Rapamycin (Rapa)
16
4
CT/GSA/MSX/Rapa
GSA, Glufosinate-ammonium; RAPA, Rapamycin; MSX, methionine sulfoximine; CT, control untreated
PRJNA360572
Response to grazing stress, imitated by injection of Acartia tonsa culture medium
6
3
grazing stress / CT
Copepod grazer presence; CT, P. tricornutum in pure medium
PRJNA376114
Transcriptomes of alternative oxidase (AOX) knock-down lines
12
2
(WT/ KD:AOX-C5 / KD:AOX-C9) * (early / late growth)
KD5, knock-down line 5; KD9, knock-down line 9; AOX, alternative oxidase; WT, Wild-Type; EARLY, early growth ; LATE , late growth
PRJNA377534
Comparison of wild type and CryP knock-down lines (Na1 and Ta3) under prolonged darkness (72h) and one hour after onset of blue light
15
2 or 3
(WT/ KD-Na1 / KD-Ta3) * (Dark / BL)
KD, knock-down line Na1; KD, knock-down line Ta3; Cyptochrome (CryP) plant-like; WT, Wild-Type
PRJNA382762
Comparison of Nitrate Reductase KO and Wild-Type Cells for a 10-d Time Course
60
3
[N-free + NH4-replete + NO3(1h/18h/42h/66h/90h/114h/138h/162h/228h)] x 2 strains (WT/KO)
KO, Knock Out, line 14; WT, Wild-Type; Nitrate Reductase; h, hours following Nitrate addition in cells first grown on NH4+, transfered in N-free media (2h) and then resupended in N03 for several days
PRJNA484278
Comparison of ambient and high pCO2
6
3
HighCO2 (400ppmv) / LowCO2 (1000 ppmv)
PRJNA551018
Comparison of low light and high light acclimated wild-type
6
3
LowLight (20 umol photons/m2/s) / HighLight (940 umol photons/m2/s)
PRJNA554372
Response to SPX KO lines to different P conditions
36
3
(WT / mPhoA / mPhoD / mSPX) * P (36 µM /<0,5 µM)
mPhoA, mutant of the alkaline phosphatase (AP), PhoA type gene; mPhoD, mutant of the alkaline phosphatase (AP), PhoD type gene; mSPX, mutant of the SPX gene; WT, Wild-Type;
PRJEB26173
Comparison of 3 morphotypes
12
4
fusiform (at 100% seawater salinity) / oval (at 10% seawater salinity) / triradiate (at 100% seawater salinity)
PRJEB34512
Comparison of ambient and high pCO2
6
3
CO2 (400 / 1000 ppmv)
LC, low CO2; HC, high CO2 medium;
PRJNA595993
Response to trans,trans-2,4-decadienal (DD) during the light cycle
8
2
Treatment (DMSO / DD) * Time (3h / 6h)
DD 2,4-decadienal treatment; DMSO exposure; h, hours of exposure
PRJNA610772
Comparison of different exposition to Naphthenic Acids
9
3
CT / 4mg NAs / 16mg NAs
NA, Naphthenic acids CT, untreated
PRJNA625589
Comparison of early and stationary growth phase
6
3
early (4d) / stationary (14d) growth phase
PRJNA649600
Comparison of chitin synthase transgenic cell lines with WT and empty vector transformant
9
3
WT / Transgenic chitin synthase / Empty vector cell lines
Tr_CHS, transgenic lines expressing TpCHS1 (chitin synthase protein) ; Tr_GFP, empty vector control ; WT, Wild-Type
PRJNA666211
Response to red and blue light of PtAureo1a knockout lines
30
3-4
Strain (WT / KO-Aureo1 str K8 / KO-Aureo1 str K9) * Treatment (BL/RL) * Time (0 / 10 / 60 min after light shift)
KO, Knock-Out (line aK8/ aK9); WT, Wild-Type; Aureo1a, Aureochrome 1a; RL, Red Light; BL, Blue Light treatment following Red Light (RL) adaptation; m, minutes
PRJNA728212
Response to phytic acid
6
3
Phytic Acid (12µM) / P+: DIP-replete (36µM)
Pi, dissolved inorganic phosphate Pi-replete
PRJNA764555
Comparison of different phosphorus sources
24
3
P (P- = CT / AEP 3.6µM / AEP 36µM / P+ = DIP 36µM) * time (1/2/3/5 days)
AEP, 2-Aminoethylphosphonic acid 36μM or 3.6µM; d, days AEP treatment; CT, control in -Pi; DIP, Dissolved inorganic phosphate (DIP) 36 μM; X, µM
PRJNA779221
Comparison of two distinct light intensities
6
3
LowLight (20 μmol photons m−2 s−1) vs HighLight (200 μmol photons m−2 s−1)
PRJNA788211
Response of chloroplast glycolysis mutant lines to different illumination and temperature regimes
104
3
KO lines (ptEnolase / ptPGAM / CT) * Culture conditions (19C 12l:12d discontinuous light:dark cycling ("19C LD"), 19C 24h continuous light ("19C CL"), and 8C 24h continuous light ("8C CL"))
CT, empty vector (zeocin resistance plus Cas9) control;ptEnol, cpEnolase (Phatr3_J41515) CRISPR knockouts (7 genetically distinct lines); ptPGAM1, PGAM1A (Phatr3_J17086) CRISPR knockouts (5 genetically distinct lines); 8C_CL, 8°C 24h continuous light; 19C_CL, 19°C 24h continuous light
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